Tools and resources useful for tandem repeat analyses
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Tandem Repeats Finder
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A program to locate and display tandem repeats in DNA sequences.
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MEME
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Tool for discovering motifs in a group of related DNA or protein sequences.
With appropriate options, it can be used to find repeats in a single sequence.
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WebLogo
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An interactive, multi-part script for generating
sequence logos.
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bend.it Server
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This server predicts DNA curvature from DNA sequences. The curvature is calculated
as a vector sum of dinucleotide geometries (roll, tilt and twist angles) using the
BEND algorithm of Godsell and Dickerson, and expressed as degrees perhelical turn
(10.5/helical turn = 1/basepair).
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